Last updated: 2021-07-27

Checks: 2 0

Knit directory: MAESTRO_documentation/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 4a7b06f

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The results in this page were generated with repository version 4a7b06f. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

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Ignored files:
    Ignored:    .DS_Store
    Ignored:    .RData
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    code/.DS_Store
    Ignored:    data/.DS_Store
    Ignored:    data/multi-scatac/.DS_Store
    Ignored:    data/multi-scrna/

Untracked files:
    Untracked:  .RDataTmp
    Untracked:  code/snRNA_genelength.R
    Untracked:  code/snRNA_genelength_TPM.R
    Untracked:  data/allen/
    Untracked:  data/multi-scatac/bed/
    Untracked:  data/multi-scatac/bigwig/GDF7_bed_added.png
    Untracked:  output/snRNA_TPM_VS_genelength.png
    Untracked:  output/snRNA_genelengthVSLognormUMI.png
    Untracked:  output/snRNA_genelengthVSUMI.png

Unstaged changes:
    Deleted:    MultiSample_scATACseq.Rproj
    Deleted:    atac_pbmc_500_nextgem.GIGGLE/0.peaks.bed
    Deleted:    atac_pbmc_500_nextgem.GIGGLE/0.peaks.bed.gz
    Deleted:    atac_pbmc_500_nextgem.GIGGLE/0.peaks.bed.result.xls
    Modified:   code/Basic_Operations.R
    Modified:   pbmc_1k_v3_8k_res.rds
    Modified:   pbmc_1k_v3_Monocyte_filtered.pdf
    Modified:   pbmc_1k_v3_Monocyte_top.pdf

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

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MIT License

Copyright (c) [2021] [Gali Bai]

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.